
Chapter 3 Preparing Samples
3-18 PerSeptive Biosystems
3
Note the following:
• When diluting sample, keep in mind that you will be
further diluting when you mix sample with matrix.
• If you are unsure of the starting concentration of sample,
make a serial dilution to prepare various dilutions of the
same sample.
• Different samples are soluble in different liquids. Try
water first, then add acetonitrile, and then add 0.1% TFA
to increase solubility if required.
• A higher concentration of TFA may enhance sample
ionization and improve sensitivity in samples prepared in
buffers.
• Many samples adhere strongly to plastic tubes and pipet
tips. You can minimize sample loss by preparing samples
in 30 percent acetonitrile with 5 to 10 percent TFA.
• Do not dilute sample with phosphate buffered saline
(PBS) or other buffer solutions. A high salt concentration
can interfere with sample ionization and may cause
increased sodium and potassium adduct peaks.
Preparing
samples for thin
layer application
Prepare samples in water. If samples contain organic solvents,
they will dissolve the matrix applied to the sample plate.
Internal standards
If you require mass accuracy greater than the accuracy
provided by external calibration, (for example, >0.05% on a
Voyager-DE system), use an internal standard. See
Appendix A, Specifications, for the mass accuracy on other
systems.
Add two standards of known molecular weight to the sample.
Standards should:
• Closely bracket the molecular weight of your unknown
• Be easily distinguished from the unknown
As a starting point, use an internal standard concentration in
the same range as your sample concentration. Because an
internal standard may affect the intensity of the sample signal,
it is a good idea to prepare sample with several different
internal standard concentrations.
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